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Species detection and abundance using a biosensor - Development and Testing of in-situ Biological Sensors

Metadata Updated: October 19, 2024

The Environmental Sample Processor (ESP), http://www.mbari.org/ESP/, is an autonomous biological sensing system that conducts in situ collection and molecular analysis of water samples and telemeters the results to shore in near real-time. The ESP can remotely detect and quantify abundance of target organisms using specific genetic probes. The probe generates a signal in the form of light, and an image of the array is taken using a camera and telemetered to shore for interpretation by experts. The intensity of the light signal is directly proportional to the abundance of the target that is present. Probes for 3 of the 4 primary HAB organisms in Puget Sound (i.e., Alexandrium, Heterosigma, and Pseudo-nitzschia) have already been used successfully on the ESP in the field. When deployed at key locations, the ESP can provide early warning of developing HABs and dramatically increase the opportunity for controlling the impacts of toxic blooms that can kill fish and contaminate shellfish. The goal of this project is to provide value added data to stakeholders in near real-time to improve early warning of HABs thereby reducing HAB-related economic losses and farmed-fish mortality and improving seafood safety. Another goal is to develop and test a method for use with the ESP to detect pathogenic Vibrio spp. (V. parahaemolyticus). Incorporating automated biosensor data into current risk and predictive models for the presence of HAB toxins and pathogens will result in a robust Health Early Warning System (HEWS). This work is designed to fill specific gaps in current risk and predictive models by providing rapid detection and reporting in real time for HABs and pathogens in conjunction with pertinent environmental data.

The project will produce datasets describing the abundance for specific harmful algae and pathogenic bacteria at deployment locations in Puget Sound.

Access & Use Information

License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

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Dates

Metadata Date February 29, 2024
Metadata Created Date October 19, 2024
Metadata Updated Date October 19, 2024
Reference Date(s) (publication)
Frequency Of Update

Metadata Source

Harvested from NMFS NWFSC

Additional Metadata

Resource Type Dataset
Metadata Date February 29, 2024
Metadata Created Date October 19, 2024
Metadata Updated Date October 19, 2024
Reference Date(s) (publication)
Responsible Party (Point of Contact, Custodian)
Contact Email
Guid gov.noaa.nmfs.inport:17812
Access Constraints Cite As: Northwest Fisheries Science Center, [Date of Access]: Species detection and abundance using a biosensor - Development and Testing of in-situ Biological Sensors [Data Date Range], https://www.fisheries.noaa.gov/inport/item/17812., Access Constraints: NA
Bbox East Long -123.006
Bbox North Lat 48.5448
Bbox South Lat 48.5348
Bbox West Long -123.016
Coupled Resource
Frequency Of Update
Harvest Object Id 775422e8-687b-4383-a741-3818db1450c8
Harvest Source Id ba43549f-8268-499d-bec8-91b164cb168f
Harvest Source Title NMFS NWFSC
Licence NOAA provides no warranty, nor accepts any liability occurring from any incomplete, incorrect, or misleading data, or from any incorrect, incomplete, or misleading use of the data. It is the responsibility of the user to determine whether or not the data is suitable for the intended purpose.
Lineage Image capture, image analysis, comparison to standard curve
Metadata Language eng
Metadata Type geospatial
Old Spatial {"type": "Polygon", "coordinates": [[[-123.016, 48.5348], [-123.006, 48.5348], [-123.006, 48.5448], [-123.016, 48.5448], [-123.016, 48.5348]]]}
Progress completed
Spatial Data Service Type
Spatial Reference System
Spatial Harvester True
Temporal Extent Begin 2010-06-01
Temporal Extent End 2012-09-30

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