Halyomorpha halys Official Gene Set v1.0

Metadata Updated: November 19, 2019

The Baylor College of Medicine sequenced and annotated the Halyomorpha halys genome as part of the i5k pilot project. The H. halys research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. This dataset presents the Halyomorpha halys Official Gene Set (OGS) v1.0. The OGS is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/; ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_H...), with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). Manual annotations performed by the community were downloaded from Apollo, QC'd, and merged with NCBI Halyomorpha halys Annotation Release 100 using the GFF3toolkit software (https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4). The resulting merged dataset was formatted for ingest into the i5k Workspace and GenBank databases, resulting in Halyomorpha halys Official Gene Set (OGS) v1.0.

Access & Use Information

Public: This dataset is intended for public access and use. License: Creative Commons CCZero

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Dates

Metadata Created Date October 4, 2019
Metadata Updated Date November 19, 2019

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date October 4, 2019
Metadata Updated Date November 19, 2019
Publisher USDA NAL
Unique Identifier 5cd7cf46-52cc-47ba-a725-378f9b5f47d3
Maintainer
Sparks, Michael
Maintainer Email
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id 9256adfc-3cea-407b-a369-00f5e30a0efb
Harvest Source Id 50ca39af-9ddb-466d-8cf3-84d67a204346
Harvest Source Title USDA JSON
License https://creativecommons.org/publicdomain/zero/1.0/
Data Last Modified 2019-09-20
Program Code 005:040
Source Datajson Identifier True
Source Hash 767354d2a024bb82eb6661f1c6bb51404c8734a1
Source Schema Version 1.1

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