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Environmental DNA of selected terrestrial vertebrates and bacteria detected in the Platte River near Ashland, Nebraska 2019-22

Metadata Updated: July 6, 2024

Water samples from the Platte River were collected and analyzed for environmental DNA (eDNA). The U.S. Geological Survey (USGS) Nebraska Water Science Center (NEWSC) collected samples monthly from November 2019 to September 2022 at the Platte River near Ashland, Nebraska (USGS: 06801000). The USGS, in cooperation with the City of Lincoln, collected these samples. Water from the Platte River was collected as a series of weighted bottle subsamples that were taken from equal width increments across the river and composited into a sterilized 1-liter bottle. An aliquot of this composited sample was extracted using a sterile syringe and then filtered by the USGS NEWSC staff using filters provided by Jonah Ventures. These filters were frozen and shipped to Jonah Ventures Laboratory in Boulder, Colorado. Any eDNA associated with 6 vertebrates (bovine, human, poultry, swine, canine, or sheep) or the Escherichia Coli bacteria were then extracted from the filter and processed using quantitative polymerase chain reaction (qPCR). These qPCR assays were chosen to identify and quantify the relative amount of eDNA for these different species that are present in the river near Ashland, Nebraska. Midway through the study effort (August 2021), a new preservative was included in the analytical method which may have introduced a step trend in some of the qPCR results. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Access & Use Information

Public: This dataset is intended for public access and use. License: No license information was provided. If this work was prepared by an officer or employee of the United States government as part of that person's official duties it is considered a U.S. Government Work.

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Dates

Metadata Created Date September 19, 2023
Metadata Updated Date July 6, 2024

Metadata Source

Harvested from DOI EDI

Additional Metadata

Resource Type Dataset
Metadata Created Date September 19, 2023
Metadata Updated Date July 6, 2024
Publisher U.S. Geological Survey
Maintainer
@Id http://datainventory.doi.gov/id/dataset/3cd95bd986d1ca696abf31a00e40bc21
Identifier USGS:63da7512d34e9fa19a97d511
Data Last Modified 20230915
Category geospatial
Public Access Level public
Bureau Code 010:12
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Metadata Catalog ID https://datainventory.doi.gov/data.json
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id b191d89e-c0e6-4d8c-8f0b-4bd56c8ca741
Harvest Source Id 52bfcc16-6e15-478f-809a-b1bc76f1aeda
Harvest Source Title DOI EDI
Metadata Type geospatial
Old Spatial -96.33207,41.05735,-96.31868,41.06822
Publisher Hierarchy White House > U.S. Department of the Interior > U.S. Geological Survey
Source Datajson Identifier True
Source Hash ff4c5b4b39743b1df6d7f8ffee6babc0996fb8fee7b59b148a59c6b1fb7d9397
Source Schema Version 1.1
Spatial {"type": "Polygon", "coordinates": -96.33207, 41.05735, -96.33207, 41.06822, -96.31868, 41.06822, -96.31868, 41.05735, -96.33207, 41.05735}

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