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Data from: Haplotype-resolved genome assembly of ‘Manhattan’ perennial ryegrass (<i>Lolium </i><i>perenne</i> L.) and characterization of drought responsive late embryogenesis abundant genes

Published by Agricultural Research Service | Department of Agriculture | Catalog Last Checked: May 05, 2026 at 11:39 PM | Dataset Last Updated: November 26, 2025
Genome sequence and annotation files of Lpman haplotype 1 and haplotype 2 genome assembly reported in the manuscript "Haplotype-resolved genome assembly of ‘Manhattan’ perennial ryegrass (Lolium perenne L.) and characterization of drought responsive late embryogenesis abundant genes". Also included is the transposable element (TE) annotation from EDTA and the organelles (chloroplast and mitochondria) genomes with annotation.

Resources

16 resources available

  • BioProject: PRJNA1247930 Lpman haplotype 2 genome assembly

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  • BioProject: PRJNA1247931 Lpman haplotype 1 genome assembly

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  • prg_genomev1.0_hap1.fasta.gz

    GZ
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  • prg_genomev1.0_hap2.fasta.gz

    GZ
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  • prg_annotationv1.0_hap1.gff

    GFF
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  • prg_annotationv1.0_hap2.gff

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  • prg_annotationv1.0_hap1_proteins.fasta

    FASTA
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  • prg_annotationv1.0_hap2_proteins.fasta

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  • prg_annotationv1.0_hap1_transcripts.fasta

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  • prg_annotationv1.0_hap2_transcripts.fasta

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  • prg_genomev1.0_hap1.fasta.mod.EDTA.TEanno.gff3

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  • prg_genomev1.0_hap2.fasta.mod.EDTA.TEanno.gff3

    GFF3
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  • Lpan_chloro.gff3

    GFF3
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  • Lpman_chloro.fasta

    FASTA
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  • Lpman_mito.fasta

    FASTA
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  • Lpman_mito.gff3

    GFF3
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Complete Metadata
@type dcat:Dataset
accessLevel public
bureauCode 
[
  "005:18"
]
contactPoint 
{
  "fn": "Robbins, Matthew D.",
  "hasEmail": "mailto:matthew.robbins@usda.gov"
}
description <p dir="ltr">Genome sequence and annotation files of Lpman haplotype 1 and haplotype 2 genome assembly reported in the manuscript "Haplotype-resolved genome assembly of ‘Manhattan’ perennial ryegrass (<i>Lolium </i><i>perenne</i> L.) and characterization of drought responsive late embryogenesis abundant genes". Also included is the transposable element (TE) annotation from EDTA and the organelles (chloroplast and mitochondria) genomes with annotation.</p>
distribution 
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identifier 10.15482/USDA.ADC/28791824.v2
keyword 
[
  "Late embryogenesis abundant (LEA)",
  "deydrin",
  "grass synteny"
]
license https://www.usa.gov/publicdomain/label/1.0/
modified 2025-11-26
programCode 
[
  "005:040"
]
publisher 
{
  "name": "Agricultural Research Service",
  "@type": "org:Organization"
}
temporal 2021-07-06/2021-07-06
title Data from: Haplotype-resolved genome assembly of ‘Manhattan’ perennial ryegrass (<i>Lolium </i><i>perenne</i> L.) and characterization of drought responsive late embryogenesis abundant genes

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