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Code from: Using cameras for precise measurement of two-dimensional plant features

Metadata Updated: April 21, 2025

Images are used frequently in plant phenotyping to capture measurements. This chapter offers a repeatable method for capturing two-dimensional measurements of plant parts in field or laboratory settings using a variety of camera styles (cellular phone, DSLR), with the addition of a printed calibration pattern. The method is based on calibrating the camera using information available from the EXIF tags from the image, as well as visual information from the pattern. Code is provided to implement the method, as well as a dataset for testing. We include steps to verify protocol correctness by imaging an artifact. The use of this protocol for two-dimensional plant phenotypoing will allow data capture from different cameras and environments, with comparison on the same physical scale. Resources in this dataset:Resource Title: Code repository: camera-as-scanner. File Name: Web Page, url: https://github.com/amy-tabb/camera-as-scanner Code for calibrating a camera using a pattern, EXIF tags, and then warping to physical dimensions times a scaling factor. Originally for use in two-dimensional plant phenotyping. Resource Title: Code repository: aruco-pattern-write. File Name: Web Page, url: https://github.com/amy-tabb/aruco-pattern-write Basic code for generating a gird of aruco patterns.Resource Title: Code repository: camera-as-scanner-data. File Name: Web Page, url: https://github.com/amy-tabb/camera-as-scanner-data A minimal working example to verify that the installation of camera-as-scanner is working as expected.Resource Title: Data and Code from: Using cameras for precise measurement of two-dimensional plant features: CASS (Zenodo). File Name: Web Page, url: http://doi.org/10.5281/zenodo.3677473

Access & Use Information

Public: This dataset is intended for public access and use. License: us-pd

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Dates

Metadata Created Date March 30, 2024
Metadata Updated Date April 21, 2025

Metadata Source

Harvested from USDA JSON

Additional Metadata

Resource Type Dataset
Metadata Created Date March 30, 2024
Metadata Updated Date April 21, 2025
Publisher Agricultural Research Service
Maintainer
Identifier 10113/AA22403
Data Last Modified 2024-02-15
Public Access Level public
Bureau Code 005:18
Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id ee944d66-77a7-43a8-a193-5b3e98de542f
Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title USDA JSON
License https://www.usa.gov/publicdomain/label/1.0/
Program Code 005:040
Source Datajson Identifier True
Source Hash 1bb0c304130643c934c1ac771daf48e90399929c417754eedaca35cea2405546
Source Schema Version 1.1

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