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    • BEAST log data from: Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine

    Metadata Updated: March 30, 2024

    These are the ".log" files from "Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in Influenza A virus (IAV) from North American swine" generated in BEAST and used to plot molecular substitution rates and calculate statistical distances between posterior distributions of these rates. The names of these files communicate information about the various BEAST runs using the following format: cladeOrLineageName_replicate_substitutionModel_treePrior_MCMCiterations_dateOfRunWithin2021.log where replicate is not always included Resources in this dataset:Resource Title: BEAST log file for clade N1.C.2.1. File Name: N1C21_SRD06_strict_GMRF_200MNov9.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.2. File Name: N1C2_SRD06_strict_GMRF_200MNov2.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3.1. File Name: N1C31_SRD06_strict_GMRF200M.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3.2. File Name: N1C32_SRD09_strict_GMRF_200MMay21.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.C.3. File Name: N1C3_r1_hkyGamma4_GMRF_200MMay20.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for clade N1.P. File Name: N1P_SRD06_strict_GMRF_200MAug2.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/ Resource Title: BEAST log file for the classical swine N1 lineage. File Name: N1classical_r1_SRD06_UCLN_GMRF_200MMay21.log.zipResource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

    Access & Use Information

    Public: This dataset is intended for public access and use. License: us-pd

    Downloads & Resources

    Dates

    Metadata Created Date March 30, 2024
    Metadata Updated Date March 30, 2024

    Metadata Source

    Harvested from USDA JSON

    Other Data Resources

    Additional Metadata

    Resource Type Dataset
    Metadata Created Date March 30, 2024
    Metadata Updated Date March 30, 2024
    Publisher Agricultural Research Service
    Maintainer
    Identifier 10.15482/USDA.ADC/1528285
    Data Last Modified 2024-02-21
    Public Access Level public
    Bureau Code 005:18
    Metadata Context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
    Schema Version https://project-open-data.cio.gov/v1.1/schema
    Catalog Describedby https://project-open-data.cio.gov/v1.1/schema/catalog.json
    Harvest Object Id dba77029-b495-43e2-9901-987c17fb5d28
    Harvest Source Id d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
    Harvest Source Title USDA JSON
    License https://www.usa.gov/publicdomain/label/1.0/
    Old Spatial {"type": "MultiPolygon", "coordinates": -82.345745265484, 9.8327239064169, -83.164076507092, 7.7402148611428, -85.836760997772, 9.4173793620844, -86.289413273335, 11.018860560027, -85.411022007465, 11.154495319768, -83.253780305386, 11.031850314318, -82.345745265484, 9.8327239064169, -90.357213914394, 13.571259814305, -89.156501591206, 14.593867742357, -88.118993639946, 15.922493702258, -79.930405318737, 21.028753398843, -77.613800168037, 19.434517765207, -73.612276911736, 20.117839630492, -81.027136445045, 23.90774637848, -79.595024585724, 27.116179878336, -50.640728473663, 47.361000390678, -74.956884384155, 75.555035919386, -58.406581878662, 82.637318822619, -76.563377380371, 84.115459571006, -170.49639701843, 71.975163797827, -174.56365585327, 55.62964345413, -125.10432243347, 32.51272930836, -105.14683127403, 18.209275138895, -90.357213914394, 13.571259814305}
    Program Code 005:040
    Source Datajson Identifier True
    Source Hash 424e0cac794456bff22efd31fcac7b806a022bd01afaa20995276b5732b260cf
    Source Schema Version 1.1
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