BEAST log data from: Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in IAV from North American swine

Metadata Updated: December 2, 2025

These are the ".log" files from "Characterizing a century of genetic diversity and contemporary antigenic diversity of N1 neuraminidase in Influenza A virus (IAV) from North American swine" generated in BEAST and used to plot molecular substitution rates and calculate statistical distances between posterior distributions of these rates. The names of these files communicate information about the various BEAST runs using the following format: cladeOrLineageName_replicate_substitutionModel_treePrior_MCMCiterations_dateOfRunWithin2021.log where replicate is not always included

Resources in this dataset:

Resource Title: BEAST log file for clade N1.C.2.1.

File Name: N1C21_SRD06_strict_GMRF_200MNov9.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resource Title: BEAST log file for clade N1.C.2.

File Name: N1C2_SRD06_strict_GMRF_200MNov2.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resource Title: BEAST log file for clade N1.C.3.1.

File Name: N1C31_SRD06_strict_GMRF200M.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resource Title: BEAST log file for clade N1.C.3.2.

File Name: N1C32_SRD09_strict_GMRF_200MMay21.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resource Title: BEAST log file for clade N1.C.3.

File Name: N1C3_r1_hkyGamma4_GMRF_200MMay20.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resource Title: BEAST log file for clade N1.P.

File Name: N1P_SRD06_strict_GMRF_200MAug2.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Resource Title: BEAST log file for the classical swine N1 lineage.

File Name: N1classical_r1_SRD06_UCLN_GMRF_200MMay21.log.zip
Resource Software Recommended: Tracer v1.7.1,url: http://tree.bio.ed.ac.uk/software/tracer/

Access & Use Information

Public: This dataset is intended for public access and use. License: us-pd

Downloads & Resources

Dates

Metadata Created Date	March 30, 2024
Metadata Updated Date	December 2, 2025

Metadata Source

Data.json Data.json Metadata
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Harvested from USDA JSON

Additional Metadata

Resource Type	Dataset
Metadata Created Date	March 30, 2024
Metadata Updated Date	December 2, 2025
Publisher	Agricultural Research Service
Maintainer	Anderson, Tavis
Identifier	10.15482/USDA.ADC/1528285
Data Last Modified	2025-11-21
Public Access Level	public
Bureau Code	005:18
Metadata Context	https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
Schema Version	https://project-open-data.cio.gov/v1.1/schema
Catalog Describedby	https://project-open-data.cio.gov/v1.1/schema/catalog.json
Harvest Object Id	104e89c2-e947-4ddd-bc63-3f759d3f8b85
Harvest Source Id	d3fafa34-0cb9-48f1-ab1d-5b5fdc783806
Harvest Source Title	USDA JSON
License	https://www.usa.gov/publicdomain/label/1.0/
Old Spatial	{"type": "MultiPolygon", "coordinates": -82.345745265484, 9.8327239064169, -83.164076507092, 7.7402148611428, -85.836760997772, 9.4173793620844, -86.289413273335, 11.018860560027, -85.411022007465, 11.154495319768, -83.253780305386, 11.031850314318, -82.345745265484, 9.8327239064169, -90.357213914394, 13.571259814305, -89.156501591206, 14.593867742357, -88.118993639946, 15.922493702258, -79.930405318737, 21.028753398843, -77.613800168037, 19.434517765207, -73.612276911736, 20.117839630492, -81.027136445045, 23.90774637848, -79.595024585724, 27.116179878336, -50.640728473663, 47.361000390678, -74.956884384155, 75.555035919386, -58.406581878662, 82.637318822619, -76.563377380371, 84.115459571006, -170.49639701843, 71.975163797827, -174.56365585327, 55.62964345413, -125.10432243347, 32.51272930836, -105.14683127403, 18.209275138895, -90.357213914394, 13.571259814305}
Program Code	005:040
Source Datajson Identifier	True
Source Hash	ac5bdd29048395297939ef3ab6a7955166e4a88a33bf20f4675c2442fae38625
Source Schema Version	1.1
Spatial	{"type": "MultiPolygon", "coordinates": -82.345745265484, 9.8327239064169, -83.164076507092, 7.7402148611428, -85.836760997772, 9.4173793620844, -86.289413273335, 11.018860560027, -85.411022007465, 11.154495319768, -83.253780305386, 11.031850314318, -82.345745265484, 9.8327239064169, -90.357213914394, 13.571259814305, -89.156501591206, 14.593867742357, -88.118993639946, 15.922493702258, -79.930405318737, 21.028753398843, -77.613800168037, 19.434517765207, -73.612276911736, 20.117839630492, -81.027136445045, 23.90774637848, -79.595024585724, 27.116179878336, -50.640728473663, 47.361000390678, -74.956884384155, 75.555035919386, -58.406581878662, 82.637318822619, -76.563377380371, 84.115459571006, -170.49639701843, 71.975163797827, -174.56365585327, 55.62964345413, -125.10432243347, 32.51272930836, -105.14683127403, 18.209275138895, -90.357213914394, 13.571259814305}
Temporal	1930-01-01/2020-09-03

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