EE2_FHM_larva_RNASeq_20210309a_GSE160535
The data are maintained at the National Center for Biotechnology Information (NCBI) GEO depository https://www.ncbi.nlm.nih.gov/geo/ . There are three accession numbers (which can be entered at this site):
• GSE160535 - Development of omic biomarkers for Fathead minnow larva (Pimephales promelas) exposed to ethinyl estradiol
A superseries which links to the two separate data sets from the same experiment (below)
• GSE158857 - Development of omic biomarkers for Fathead minnow larva (Pimephales promelas) exposed to ethinyl estradiol [non-coding small RNA]
The non-coding small RNA dataset (includes microRNA and PIWI-RNA data and metadata
• GSE160520 - Development of omic biomarkers for Fathead minnow larva (Pimephales promelas) exposed to ethinyl estradiol [mRNA]
The mRNA data set including metadata.
This dataset is associated with the following publication:
Toth, G., J. Martinson, D. Bencic, D. Lattier, M. Kostich, and A. Biales. Development of omcis biomarkers for estrogen exposure using mRNA, miRNA and piRNAs. AQUATIC TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 235: 105807, (2021).
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Gregory Toth", "hasEmail": "mailto:toth.greg@epa.gov" } |
| describedBy | https://pasteur.epa.gov/uploads/10.23719/1520955/documents/EE2_FHM_larva_RNASeq_20210309a_GSE160535_DDict.xlsx |
| describedByType | application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
| description | The data are maintained at the National Center for Biotechnology Information (NCBI) GEO depository https://www.ncbi.nlm.nih.gov/geo/ . There are three accession numbers (which can be entered at this site): • GSE160535 - Development of omic biomarkers for Fathead minnow larva (Pimephales promelas) exposed to ethinyl estradiol A superseries which links to the two separate data sets from the same experiment (below) • GSE158857 - Development of omic biomarkers for Fathead minnow larva (Pimephales promelas) exposed to ethinyl estradiol [non-coding small RNA] The non-coding small RNA dataset (includes microRNA and PIWI-RNA data and metadata • GSE160520 - Development of omic biomarkers for Fathead minnow larva (Pimephales promelas) exposed to ethinyl estradiol [mRNA] The mRNA data set including metadata. This dataset is associated with the following publication: Toth, G., J. Martinson, D. Bencic, D. Lattier, M. Kostich, and A. Biales. Development of omcis biomarkers for estrogen exposure using mRNA, miRNA and piRNAs. AQUATIC TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 235: 105807, (2021). |
| distribution |
[ { "title": "https://www.ncbi.nlm.nih.gov/geo/", "accessURL": "https://www.ncbi.nlm.nih.gov/geo/" } ] |
| identifier | https://doi.org/10.23719/1520955 |
| keyword |
[ "estrogen", "fathead minnow", "non-coding RNA", "transcriptome" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2020-12-11 |
| programCode |
[ "020:095" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.1016/j.aquatox.2021.105807" ] |
| rights |
null
|
| title | EE2_FHM_larva_RNASeq_20210309a_GSE160535 |
