Drinking Water Microbiome Sequence Data Set
The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU).
This dataset is associated with the following publication:
Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020).
Resources
2 resources available
-
https://www.ncbi.nlm.nih.gov/sra/?term=SRP069876
FILE -
BM_OTU.fasta.zip
APPLICATION/X-ZIP-COMPRESSED
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Complete Metadata
| @type | dcat:Dataset |
|---|---|
| accessLevel | public |
| bureauCode |
[ "020:00" ] |
| contactPoint |
{ "fn": "Vicente Gomez-Alvarez", "hasEmail": "mailto:gomez-alvarez.vicente@epa.gov" } |
| description | The fasta file (BM_OTU.fasta) contain the sequences of the bacterial 16S rRNA-encoding V4 region gene (≈250 nt) for each Operational Taxonomic Unit (OTU). This dataset is associated with the following publication: Gomez-Alvarez, V., and R. Revetta. Monitoring of Nitrification in Chloraminated Drinking Water Distribution Systems With Microbiome Bioindicators Using Supervised Machine Learning. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 11: 2254-2267, (2020). |
| distribution |
[ { "title": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP069876", "accessURL": "https://www.ncbi.nlm.nih.gov/sra/?term=SRP069876" }, { "title": "BM_OTU.fasta.zip", "mediaType": "application/x-zip-compressed", "downloadURL": "https://pasteur.epa.gov/uploads/10.23719/1369387/BM_OTU.fasta.zip" } ] |
| identifier | https://doi.org/10.23719/1369387 |
| keyword |
[ "16S rRNA", "OTU", "drinking water", "machine learning", "microbial communities", "microbiome", "nitrification" ] |
| license | https://pasteur.epa.gov/license/sciencehub-license.html |
| modified | 2017-07-06 |
| programCode |
[ "020:096" ] |
| publisher |
{ "name": "U.S. EPA Office of Research and Development (ORD)", "subOrganizationOf": { "name": "U.S. Environmental Protection Agency", "subOrganizationOf": { "name": "U.S. Government" } } } |
| references |
[ "https://doi.org/10.3389/fmicb.2020.571009" ] |
| rights |
null
|
| title | Drinking Water Microbiome Sequence Data Set |
